Code quality sweep: 30+ bug fixes, security hardening, and UX improvements (#507)

* Update waitlist, run ralph experiments

* fix PR files pagination: use octokit.paginate() for >100 files

* fix garbled FAQ answer on landing page

* track cache read/write tokens in OpenCode agent usage

* wrap dispatch() calls in try/catch to prevent webhook retries on transient failures

* replace raw error messages with generic responses in API routes

* guard request.json() calls with try-catch returning 400 on malformed bodies

* log warning when GraphQL review thread/comment counts hit pagination limits

* reduce review comment cache TTL from 24 hours to 10 minutes

* use select instead of include for proxyKey in workflow run queries

* align Claude agent activity timeout to 5 minutes to match OpenCode agent

* add in-memory dedup for PR close webhooks to prevent duplicate indexing

* extract isPullfrogLogin() helper for shared Pullfrog detection logic

* check response.ok on log fetch in checkSuite.ts

* add 10s timeouts to checkSuite API calls and log fetch

* parallelize proxy key usage API calls with Promise.allSettled

* fix three typos on landing page: colleage, dectects, reponse

* move MAX_STDERR_LINES constant to shared.ts

* add indexes on Repo.accountId and PFUser.accountId FK columns

* remove unused Permission enum from Prisma schema

* populate author and keywords in action/package.json

* use crypto.timingSafeEqual for all secret comparisons

* add missing env vars to globals.ts: R2, webhook, and API secrets

* remove commented-out UserRepo model from Prisma schema

* replace console.log/error with log utility in production API routes

* replace catch(error: any) with proper type guards in getUserRole

* remove stale TODO comment on console page

* handle repository_transferred webhook to update owner

* show toast.error instead of console.error on mode/workflow mutation failures

* add Space key handler for keyboard navigation on workflow run links

* replace role=link spans with button elements for proper accessibility

* add root 404 page with Pullfrog branding

* update ISSUES.md: mark completed items

* mark remaining low-priority UX items as addressed

* add error logging alongside toasts, add check script, update ralph commands

* address review feedback: squash migrations, fix try/catch scope, wire up globals consumers

- squash drop_permission_enum migration into add_indexes migration (one migration per PR)
- move getPullRequest() outside try/catch in mention handler so errors aren't mislogged as "dispatch failed"
- restore key ID in proxyKeys.ts Promise.allSettled error log
- remove accidental asdf.txt and ralph.md files
- wire up globals.ts exports to consumers (r2-uploads, r2-private, verifyHookdeckSignature, sync-usage, forwardPreviewWebhook, dispatch-workflow)

Made-with: Cursor

* update model snapshot (qwen3.6-plus-preview renamed to qwen3.6-plus)

Made-with: Cursor

agents/claude.ts

@@ -24,7 +24,13 @@ import { spawn } from "../utils/subprocess.ts";
 import { ThinkingTimer } from "../utils/timer.ts";
 import type { TodoTracker } from "../utils/todoTracking.ts";
 import { getDevDependencyVersion } from "../utils/version.ts";
-import { type AgentResult, type AgentRunContext, type AgentUsage, agent } from "./shared.ts";
+import {
+  type AgentResult,
+  type AgentRunContext,
+  type AgentUsage,
+  agent,
+  MAX_STDERR_LINES,
+} from "./shared.ts";
 
 async function installClaudeCli(): Promise<string> {
   return await installFromNpmTarball({
@@ -311,7 +317,7 @@ async function runClaude(params: RunParams): Promise<AgentResult> {
   };
 
   const recentStderr: string[] = [];
-  const MAX_STDERR_LINES = 20;
+
   let lastProviderError: string | null = null;
 
   let output = "";
@@ -323,7 +329,7 @@ async function runClaude(params: RunParams): Promise<AgentResult> {
       args: params.args,
       cwd: params.cwd,
       env: params.env,
-      activityTimeout: 0,
+      activityTimeout: 300_000,
       stdio: ["ignore", "pipe", "pipe"],
       onStdout: async (chunk) => {
         const text = chunk.toString();

agents/opentoad.ts

@@ -25,7 +25,13 @@ import { spawn } from "../utils/subprocess.ts";
 import { ThinkingTimer } from "../utils/timer.ts";
 import type { TodoTracker } from "../utils/todoTracking.ts";
 import { getDevDependencyVersion } from "../utils/version.ts";
-import { type AgentResult, type AgentRunContext, type AgentUsage, agent } from "./shared.ts";
+import {
+  type AgentResult,
+  type AgentRunContext,
+  type AgentUsage,
+  agent,
+  MAX_STDERR_LINES,
+} from "./shared.ts";
 
 async function installOpencodeCli(): Promise<string> {
   return await installFromNpmTarball({
@@ -255,7 +261,7 @@ async function runOpenCode(params: RunParams): Promise<AgentResult> {
   const thinkingTimer = new ThinkingTimer();
 
   let finalOutput = "";
-  let accumulatedTokens = { input: 0, output: 0 };
+  let accumulatedTokens = { input: 0, output: 0, cacheRead: 0, cacheWrite: 0 };
   let tokensLogged = false;
   const toolCallTimings = new Map<string, number>();
   let currentStepId: string | null = null;
@@ -263,11 +269,15 @@ async function runOpenCode(params: RunParams): Promise<AgentResult> {
   let stepHistory: Array<{ stepId: string; stepType: string; toolCalls: string[] }> = [];
 
   function buildUsage(): AgentUsage | undefined {
-    return accumulatedTokens.input > 0 || accumulatedTokens.output > 0
+    const totalInput =
+      accumulatedTokens.input + accumulatedTokens.cacheRead + accumulatedTokens.cacheWrite;
+    return totalInput > 0 || accumulatedTokens.output > 0
       ? {
           agent: "pullfrog",
-          inputTokens: accumulatedTokens.input,
+          inputTokens: totalInput,
           outputTokens: accumulatedTokens.output,
+          cacheReadTokens: accumulatedTokens.cacheRead || undefined,
+          cacheWriteTokens: accumulatedTokens.cacheWrite || undefined,
         }
       : undefined;
   }
@@ -279,7 +289,7 @@ async function runOpenCode(params: RunParams): Promise<AgentResult> {
       );
       log.debug(`» ${params.label} init event (full): ${JSON.stringify(event)}`);
       finalOutput = "";
-      accumulatedTokens = { input: 0, output: 0 };
+      accumulatedTokens = { input: 0, output: 0, cacheRead: 0, cacheWrite: 0 };
       tokensLogged = false;
     },
     message: (event: OpenCodeMessageEvent) => {
@@ -321,6 +331,8 @@ async function runOpenCode(params: RunParams): Promise<AgentResult> {
       if (eventTokens) {
         accumulatedTokens.input += eventTokens.input || 0;
         accumulatedTokens.output += eventTokens.output || 0;
+        accumulatedTokens.cacheRead += eventTokens.cache?.read || 0;
+        accumulatedTokens.cacheWrite += eventTokens.cache?.write || 0;
       }
       if (currentStepId === stepId) {
         currentStepId = null;
@@ -425,7 +437,7 @@ async function runOpenCode(params: RunParams): Promise<AgentResult> {
   };
 
   const recentStderr: string[] = [];
-  const MAX_STDERR_LINES = 20;
+
   let lastProviderError: string | null = null;
 
   let output = "";

agents/shared.ts

@@ -3,6 +3,9 @@ import type { ResolvedInstructions } from "../utils/instructions.ts";
 import type { ResolvedPayload } from "../utils/payload.ts";
 import type { TodoTracker } from "../utils/todoTracking.ts";
 
+// maximum number of stderr lines to keep in the rolling buffer during agent execution
+export const MAX_STDERR_LINES = 20;
+
 /**
  * token/cost usage data from a single agent run
  */