add lint/format scripts and fix all biome errors (#233)

Add `lint`, `lint:fix`, `format`, and `format:fix` package.json scripts
backed by biome. Add AGENTS.md rule for agents to run them after changes.
Fix all existing lint and format violations across the codebase.

Co-authored-by: Cursor <cursoragent@cursor.com>

agents/claude.ts

@@ -167,7 +167,10 @@ export const claude = agent({
 
     if (result.exitCode !== 0) {
       const errorMessage =
-        result.stderr || finalOutput || result.stdout || "Unknown error - no output from Claude CLI";
+        result.stderr ||
+        finalOutput ||
+        result.stdout ||
+        "Unknown error - no output from Claude CLI";
       log.error(`Claude CLI exited with code ${result.exitCode}: ${errorMessage}`);
       return {
         success: false,

entry

@@ -41814,11 +41814,11 @@ var require_core2 = __commonJS({
     Ajv2.ValidationError = validation_error_1.default;
     Ajv2.MissingRefError = ref_error_1.default;
     exports.default = Ajv2;
-    function checkOptions(checkOpts, options, msg, log3 = "error") {
+    function checkOptions(checkOpts, options, msg, log2 = "error") {
       for (const key in checkOpts) {
         const opt = key;
         if (opt in options)
-          this.logger[log3](`${msg}: option ${key}. ${checkOpts[opt]}`);
+          this.logger[log2](`${msg}: option ${key}. ${checkOpts[opt]}`);
       }
     }
     function getSchEnv(keyRef) {
@@ -55729,13 +55729,13 @@ var require_mock_call_history = __commonJS({
     function makeFilterCalls(parameterName) {
       return (parameterValue) => {
         if (typeof parameterValue === "string" || parameterValue == null) {
-          return this.logs.filter((log3) => {
+          return this.logs.filter((log2) => {
-            return log3[parameterName] === parameterValue;
+            return log2[parameterName] === parameterValue;
           });
         }
         if (parameterValue instanceof RegExp) {
-          return this.logs.filter((log3) => {
+          return this.logs.filter((log2) => {
-            return parameterValue.test(log3[parameterName]);
+            return parameterValue.test(log2[parameterName]);
           });
         }
         throw new InvalidArgumentError(`${parameterName} parameter should be one of string, regexp, undefined or null`);
@@ -55830,8 +55830,8 @@ var require_mock_call_history = __commonJS({
           return this.logs.filter(criteria);
         }
         if (criteria instanceof RegExp) {
-          return this.logs.filter((log3) => {
+          return this.logs.filter((log2) => {
-            return criteria.test(log3.toString());
+            return criteria.test(log2.toString());
           });
         }
         if (typeof criteria === "object" && criteria !== null) {
@@ -55881,13 +55881,13 @@ var require_mock_call_history = __commonJS({
         this.logs = [];
       }
       [kMockCallHistoryAddLog](requestInit) {
-        const log3 = new MockCallHistoryLog(requestInit);
+        const log2 = new MockCallHistoryLog(requestInit);
-        this.logs.push(log3);
+        this.logs.push(log2);
-        return log3;
+        return log2;
       }
       *[Symbol.iterator]() {
-        for (const log3 of this.calls()) {
+        for (const log2 of this.calls()) {
-          yield log3;
+          yield log2;
         }
       }
     };
@@ -75811,7 +75811,7 @@ var require_node = __commonJS({
     var tty = __require("tty");
     var util2 = __require("util");
     exports.init = init;
-    exports.log = log3;
+    exports.log = log2;
     exports.formatArgs = formatArgs2;
     exports.save = save;
     exports.load = load;
@@ -75946,7 +75946,7 @@ var require_node = __commonJS({
       }
       return (/* @__PURE__ */ new Date()).toISOString() + " ";
     }
-    function log3(...args3) {
+    function log2(...args3) {
       return process.stderr.write(util2.formatWithOptions(exports.inspectOpts, ...args3) + "\n");
     }
     function save(namespaces) {
@@ -109560,7 +109560,7 @@ var require_depd = /* @__PURE__ */ __commonJSMin(((exports, module) => {
     if (!namespace) throw new TypeError("argument namespace is required");
     var file2 = callSiteLocation(getStack()[1])[0];
     function deprecate$1(message) {
-      log3.call(deprecate$1, message);
+      log2.call(deprecate$1, message);
     }
     deprecate$1._file = file2;
     deprecate$1._ignored = isignored(namespace);
@@ -109582,7 +109582,7 @@ var require_depd = /* @__PURE__ */ __commonJSMin(((exports, module) => {
     if (process.traceDeprecation) return true;
     return containsNamespace(process.env.TRACE_DEPRECATION || "", namespace);
   }
-  function log3(message, site) {
+  function log2(message, site) {
     var haslisteners = eehaslisteners(process, "deprecation");
     if (!haslisteners && this._ignored) return;
     var caller;
@@ -109688,7 +109688,7 @@ var require_depd = /* @__PURE__ */ __commonJSMin(((exports, module) => {
     var args3 = createArgumentsString(fn2.length);
     var site = callSiteLocation(getStack()[1]);
     site.name = fn2.name;
-    return new Function("fn", "log", "deprecate", "message", "site", '"use strict"\nreturn function (' + args3 + ") {log.call(deprecate, message, site)\nreturn fn.apply(this, arguments)\n}")(fn2, log3, this, message, site);
+    return new Function("fn", "log", "deprecate", "message", "site", '"use strict"\nreturn function (' + args3 + ") {log.call(deprecate, message, site)\nreturn fn.apply(this, arguments)\n}")(fn2, log2, this, message, site);
   }
   function wrapproperty(obj, prop, message) {
     if (!obj || typeof obj !== "object" && typeof obj !== "function") throw new TypeError("argument obj must be object");
@@ -109702,11 +109702,11 @@ var require_depd = /* @__PURE__ */ __commonJSMin(((exports, module) => {
     var get2 = descriptor.get;
     var set2 = descriptor.set;
     if (typeof get2 === "function") descriptor.get = function getter() {
-      log3.call(deprecate$1, message, site);
+      log2.call(deprecate$1, message, site);
       return get2.apply(this, arguments);
     };
     if (typeof set2 === "function") descriptor.set = function setter() {
-      log3.call(deprecate$1, message, site);
+      log2.call(deprecate$1, message, site);
       return set2.apply(this, arguments);
     };
     Object.defineProperty(obj, prop, descriptor);
@@ -127308,7 +127308,7 @@ ${error49 instanceof Error ? error49.stack : JSON.stringify(error49)}`
             );
           }
         };
-        const log3 = {
+        const log2 = {
           debug: (message, context) => {
             this.#server.sendLoggingMessage({
               data: {
@@ -127370,7 +127370,7 @@ ${error49 instanceof Error ? error49.stack : JSON.stringify(error49)}`
           client: {
             version: this.#server.getClientVersion()
           },
-          log: log3,
+          log: log2,
           reportProgress: reportProgress2,
           requestId: typeof request2.params?._meta?.requestId === "string" ? request2.params._meta.requestId : void 0,
           session: this.#auth,
@@ -136485,7 +136485,7 @@ async function fetchWrapper(requestOptions) {
       "fetch is not set. Please pass a fetch implementation as new Octokit({ request: { fetch }}). Learn more at https://github.com/octokit/octokit.js/#fetch-missing"
     );
   }
-  const log3 = requestOptions.request?.log || console;
+  const log2 = requestOptions.request?.log || console;
   const parseSuccessResponseBody = requestOptions.request?.parseSuccessResponseBody !== false;
   const body = isPlainObject4(requestOptions.body) || Array.isArray(requestOptions.body) ? JSON.stringify(requestOptions.body) : requestOptions.body;
   const requestHeaders = Object.fromEntries(
@@ -136543,7 +136543,7 @@ async function fetchWrapper(requestOptions) {
   if ("deprecation" in responseHeaders) {
     const matches = responseHeaders.link && responseHeaders.link.match(/<([^<>]+)>; rel="deprecation"/);
     const deprecationLink = matches && matches.pop();
-    log3.warn(
+    log2.warn(
       `[@octokit/request] "${requestOptions.method} ${requestOptions.url}" is deprecated. It is scheduled to be removed on ${responseHeaders.sunset}${deprecationLink ? `. See ${deprecationLink}` : ""}`
     );
   }

test/adhoc/pushDisabled.ts

@@ -1,5 +1,5 @@
 import type { AgentResult, TestRunnerOptions, ValidationCheck } from "../utils.ts";
-import { defineFixture, getAgentOutput, getStructuredOutput } from "../utils.ts";
+import { defineFixture, getStructuredOutput } from "../utils.ts";
 
 /**
  * push disabled test - validates that all push operations are blocked.

utils/github.ts

@@ -2,7 +2,6 @@ import { createSign } from "node:crypto";
 import * as core from "@actions/core";
 import { throttling } from "@octokit/plugin-throttling";
 import { Octokit } from "@octokit/rest";
-import { log } from "./cli.ts";
 import { retry } from "./retry.ts";
 
 export interface InstallationToken {