Implement granular tool permissions (#82)

* Granular tool permissions

* Fix build

* Start on UI

* Fixes

* Fmt

* Go ham on UI

* Update migrations

* Considate wiki files

* Clean up

* More tweaks. Docs.

* Consolidate collab and noncollab

* Fix build

* Restrict for non-collaborators

fixtures/bash-restricted.ts

@@ -0,0 +1,14 @@
+import type { Inputs } from "../main.ts";
+
+/**
+ * test fixture: tests bash=restricted enforcement.
+ * the agent should use MCP bash tool (not native bash).
+ *
+ * run with: AGENT_OVERRIDE=claude pnpm play bash-restricted.ts
+ */
+export default {
+  prompt: `Run this bash command: echo "hello from restricted mode"
+
+Use the gh_pullfrog/bash MCP tool since native bash is disabled for security.`,
+  bash: "restricted",
+} satisfies Inputs;